Juna and Tokio return to the city and meet up with their classmate Saiyuri, while Teresa informs her SEED commander of a virus that's spreading over western Japan from genetically engineered agriculture. At a fast food restaurant, Juna learns one the perils of her new power, but all this is overshadowed when Tokio contracts the virus. Juna is sent into Tokio to save his life from the Raaja that lurks within both of them.